RIO Journal 5 years on: over 300 published outcomes from all around the research cycle

Five years on, the Open Science-driven journal Research Ideas and Outcomes (RIO) published an editorial that looks back on the 300 research ideas and research outcomes it has published so far.

Since its early days, RIO has enjoyed quite positive reactions from the open-minded academic community for its innovative approach to Open Science in practice: it provides a niche that had long been missing, namely the publication of early, intermediate and generally unconventional research outcomes from all around the research cycle (e.g. grant proposals, data management plans, project deliverables, reports, policy briefs, conference materials) in a cross-disciplinary scientific journal. In fact, several months after its launch, in 2016, the journal was acknowledged with the SPARC Innovator Award.

‘Alternative’ research publications

In times when posting a preprint was seen as a novel and rather bold practice across many fields, RIO facilitated much deeper dives into the research process, in order to unveil scientific knowledge and the process by which it is gathered, well before any final conclusions have been drawn. Long story short, to date, RIO has published 33 Research Ideas78 Grant Proposals16 Data Management Plans33 Workshop Reports and 5 PhD Project Plans, in addition to plenty of other early, interim and final non-traditional research outcomes, as well as conventional articles. Over time, RIO has kept adding additional article types to its list of publication types, with a few more expected in the near future.

What’s more, over the years, we’ve already observed how papers published in RIO successfully followed up on the continuity of the research process. For example, the Grant Proposal for the “Exploring the opportunities and challenges of implementing open research strategies within development institutions” project, funded by the International Development Research Centre (IDRC), was followed by the project’s Data Management Plan a year later.

Five years later, the figures reflecting the usage and engagement with the content published in RIO are evidently supportive of the value of having non-final and unconventional academic publications. For instance, the Grant Proposal for the COST Action DNAqua-Net, a still ongoing project dedicated to the development of novel genetic tools for bioassessment and monitoring of aquatic ecosystems, is the article with the most total views in RIO’s publication record to date. In the category of sub-article elements, whose usage is also tracked at the journal, the most viewed figure belongs to a Project Report and illustrates a sample code meant to be used in future neuroimaging studies. Similarly, the most viewed table ever published in RIO is part of a Workshop Report that summarises ASAPbio‘s third workshop, dedicated to the technical aspects of services related to the promotion of preprints in the biomedical and other life science communities.

Response to societal challenges

A unique and defining staple for RIO since the very beginning has also been the pronounced engagement with the Sustainable Development Goals (SDGs), as formulated by the United Nations right around the time of RIO’s launch. In order to highlight the societal impact of published research, RIO lets authors map their articles to the SDGs relevant to their paper. Once published, the article displays the associated badge(s) next to its title. Readers of the journal can even search RIO’s content by SDG, in the same way they would filter articles by subject, publication types, date or funding agency. Next on the list for RIO is to add another level of granularity to the SDGs mapping. The practice has already been piloted by mapping relevant RIO articles to the ten targets under SDG14 (Life below water).

Taking transparency, responsibility and collaboration in academia and scholarly publishing up another notch, RIO requires for reviews to be publicly available. In addition, the journal supports post-publication reviews, where peers are free to post their review anytime. In turn, RIO registers each review with its own DOI via CrossRef, in order to recognise the valuable input and let the reviewers easily refer to their contributions. A fine example is a Review Article exploring the biodiversity-related issues and challenges across Southeast Asia, which currently has a total of three public peer reviews, one of which is provided two years after the publication of the paper.

Public, transparent and perpetual peer review, pre- and/or post-publication

What’s more striking about peer review at RIO, however, is that it is not always mandatory. Given that the journal publishes many article types that have already been scrutinised by a legitimate authority – for instance, Grant Proposals that have previously been evaluated by a funder or defended PhD Theses – it only makes sense to avoid withholding these publications and duplicating associated evaluation efforts. On such occasions, all an author needs to do is provide a statement about the review status of their paper, which will be made public alongside the article.

On the other hand, where the article type of a manuscript requires pre-publication review, to avoid potential delays caused by the review process and editorial decisions, RIO encourages the authors to post their pre-review manuscript as a preprint on the recently launched ARPHA Preprints platform, subject to a quick editorial screening, which would only take a few days.

Further, RIO has now abandoned the practice of burdening the journal’s editors with the time-consuming task of finding reviewers, and instead requiring the submitting author to invite suitable reviewers upon submission, who are then immediately and automatically invited by the system. While significantly expediting the editorial work on a manuscript, this practice doesn’t compromise the quality of peer review in the slightest, since the reviews go public, while the final decision about the acceptance of the paper lies with the editor, who is also overlooking the process and able to intervene and invite additional reviewers anytime, if necessary.

Project-driven knowledge hub

The most significant novelty at RIO, however, is perhaps the newly assumed role of the journal as “a project-driven knowledge hub“, targeting specifically the needs of research projects, conference organisers and institutions. For them, RIO provides a one-stop source for the outputs of their scientists, in order to comply with the requirements of their funders or management, or simply to facilitate the discoverability, reusability and citability of their academic outputs and to highlight their interconnectedness.

Unlike typical permanent article collections, already widely used in scholarly publishing, with RIO, collection owners can take advantage of the unique opportunity to add a wide range of research outputs, including such published elsewhere, in order to provide even greater context to the assembled research outputs in their project- or institution-branded article collection (see the Horizon 2020 Project Path2Integrity‘s project collection as an example).

A permanent topical collection in RIO Journal may include a diverse range of both traditional and unconventional research outputs, as well as links to publications from outside the journal (see What can I publish on the journal’s website). 

For example, a project coordinator could open a collection under the brand of the project, and start by publishing the Grant Proposal, followed shortly by Data and Software Management Plans and Workshop Reports. Thus, even at this early point in the project’s development, the funder – and with them everyone else – would already have strong evidence of the project’s dedication to transparency and active science communication. Later on, the project’s participants would all be able to easily add to the project’s collection by either submitting their diverse research outputs straight to RIO and having it accepted by the collection lead editor, or providing metadata and link to their publication from elsewhere, even preprints. If the document is published outside of RIO, its metadata, i.e. author names and affiliations, article title and publication date, show up in the collection, while a click on the item will lead to the original publication. As the project progresses, the team behind it could add more and more outputs (e.g. Project Reports, Guidelines and Policy Briefs), continuously updating the public and the relevant stakeholders about the development of their work. Eventually, the collection will be able to provide a comprehensive and fully transparent report of the project from start to finish.

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In a nutshell: The four peer review stages in RIO explained

Having received a number of requests to further clarify our peer review process, we hereby provide a concise summary of the four author- and journal-organised peer review stages applicable to all research article publications submitted to RIO

 

Stage 1: Author-organised pre-submission review

Optional. This review process can take place in the ARPHA Writing Tool (AWT) during the authoring process BEFORE the manuscript is submitted to the journal. It works much like discussion of a manuscript within an institutional department, akin to soliciting comments and changes on a collaborate Google Doc file. The author can invite reviewers via the “+Reviewers” button located on the upper horizontal bar of the AWT. Then, the author(s) and the reviewers are able to work together in the ARPHA online environment through an inline comment/reply interface. The reviewers are then expected to submit a concise evaluation form and a final statement.

The pre-submission review is not mandatory, but we strongly encourage it. Pre-submission reviews will be published along with the article and will bear a DOI and citation details. Articles reviewed before submission are labelled “Reviewed” when published. Manuscripts that have not been peer-reviewed before submission can be published on the basis of in-house editorial and technical checks, and will be labelled “Reviewable”.

If there is no pre-submission review, the authors have to provide a public statement explaining why they do not have, or need a pre-submission review for this work (e.g. a manuscript has been previously reviewed; a grant proposal has already been accepted for funding, etc.).

 

Stage 2: Pre-submission technical and editorial check with in-house editors or relevant members of RIO’s editorial board

Mandatory. Provided by the journal’s editorial office within the ARPHA Writing Tool when a manuscript is submitted to the journal. If necessary, it can take several rounds, until the manuscript is improved to the level appropriate for direct submission and publication in the journal. This stage ensures format compliance with RIO’s requirements, as well as relevant funding-body and discipline-specific requirements.

 

Stage 3: Community-sourced post-publication peer review

Continuously available. All articles published in RIO are available for post-publication review, regardless of them being subject to a pre-submission review or not, or their review status (Reviewable, Reviewed, or RIO-validated). The author may decide to publish a revised version of an article anytime based on feedback received from the community. Putatively, even years after publication of the original work our system allows a review to be published alongside the paper.  

 

Stage 4: Journal-organized post-publication peer review

Optional. If the author(s) request it, the journal can additionally organize a formal peer review from discipline-specific researchers in a timely manner. Authors may suggest reviewers during the submission process, but RIO may not necessarily invite suggested reviewers.

Once an editor and reviewers are invited by the journal, the review process happens much like the conventional peer review in many other journals, but is entirely open and transparent. It is also subject to a small additional fee, in order to cover the management of this process. When this review stage is successfully completed and the editors have decided to validate the article, the revised article version is labelled “RIO-validated”.

PART 2: The ARPHA Writing Tool: Adding Value to RIO

Last week, we presented some basic features of the ARPHA Writing Tool (AWT), focusing on the collaborative authoring process. This post will add the novelties that ARPHA has adopted when it comes to submission and post-submission processes.

arpha-validation

   

Two-step VALIDATION:

Checks are a must whenever high-quality, professional writing is concerned. Shortly before submitting their manuscripts via ARPHA, the authors are free to initiate the first step of the validation process at any time. As a result, an automated technical check runs through the manuscript to verify its consistency and compliance with the JATS (Journal Article Tag Suite) standard as well as key elements of the journal’s policy.

After the automated checks, there is a second-layer of human checks made by RIO editorial assistants in order to bring the manuscript to a pre-publication level. They check compliance with further elements of the journal’s policy as well as linguistic consistency and work with the authors before finalising it altogether.

 

After SUBMISSION:

Even after submission, collaboration continues. With the peer-review stage being as transparent and open as the whole vision of RIO is, this step is no less straightforward and organised. All peer reviews are automatically consolidated into a single online file that makes the editorial process simple and pleasant. This is made possible by the XML-based workflow in the AWT.

arpha-review-

PEER-REVIEW evolution:

Last week, we mentioned that an author can invite reviewers during the authoring stage itself. Let us elaborate here by saying that the ARPHA Writing Tool provides a functionality for pre-submission peer review(s) performed during the authoring process. These peer reviews are submitted together with the manuscript, so that the editorial evaluation and publication can be significantly sped up.

Post-publication UPDATES:

Even after an article is brought to life, ARPHA continues to play a role in it. Because of the XML workflow, authors are able to publish updated versions of their articles at any time. Once they request such an update, their work is returned to the ARPHA Writing Tool, where authors and peers are to collaborate once again. Eventually, the two versions are linked via CrossMark, so that nothing is lost.   

As you might have already noticed, just like RIO, the new ARPHA Writing Tool is constructed entirely around the needs of its authors. Why not find out yourself by giving ARPHA & RIO a try when they open for submission early next month?